Prosecution Insights
Last updated: July 17, 2026
Application No. 16/939,921

MOLECULAR DETECTION USING LIGATION AMPLIFICATION

Non-Final OA §112
Filed
Jul 27, 2020
Priority
Dec 16, 2016 — provisional 62/435,424 +5 more
Examiner
SCHLOOP, ALLISON ELIZABETH
Art Unit
1683
Tech Center
1600 — Biotechnology & Organic Chemistry
Assignee
Aratome LLC
OA Round
6 (Non-Final)
64%
Grant Probability
Moderate
6-7
OA Rounds
0m
Est. Remaining
99%
With Interview

Examiner Intelligence

Grants 64% of resolved cases
64%
Career Allowance Rate
23 granted / 36 resolved
+3.9% vs TC avg
Strong +54% interview lift
Without
With
+53.8%
Interview Lift
resolved cases with interview
Typical timeline
3y 10m
Avg Prosecution
44 currently pending
Career history
86
Total Applications
across all art units

Statute-Specific Performance

§101
7.5%
-32.5% vs TC avg
§103
48.7%
+8.7% vs TC avg
§102
2.2%
-37.8% vs TC avg
§112
16.7%
-23.3% vs TC avg
Black line = Tech Center average estimate • Based on career data from 36 resolved cases

Office Action

§112
DETAILED ACTION Notice of Pre-AIA or AIA Status The present application, filed on or after March 16, 2013, is being examined under the first inventor to file provisions of the AIA . Continued Examination Under 37 CFR 1.114 A request for continued examination under 37 CFR 1.114, including the fee set forth in 37 CFR 1.17(e), was filed in this application after final rejection. Since this application is eligible for continued examination under 37 CFR 1.114, and the fee set forth in 37 CFR 1.17(e) has been timely paid, the finality of the previous Office action has been withdrawn pursuant to 37 CFR 1.114. Applicant's submission filed on March 26th, 2026 has been entered. Response to Amendment The amendment filed March 26th, 2026 is acknowledged. Regarding the Office Action mailed October 27th, 2025: The rejections set forth under 35 U.S.C. 103 are withdrawn in view of the amendments, arguments, and affidavit. New grounds of rejection are set forth below, as necessitated by the amendments. Claim Summary Claim 178 has been amended. Claims 1-177 have been canceled. Claims 178-200 are pending. Claims 197-199 are withdrawn from consideration as being drawn to a non-elected invention/species. Claims 178-196 and 200 are under examination and discussed in this Office action. Claim Rejections - 35 USC § 112(b) The following is a quotation of 35 U.S.C. 112(b): (b) CONCLUSION.—The specification shall conclude with one or more claims particularly pointing out and distinctly claiming the subject matter which the inventor or a joint inventor regards as the invention. The following is a quotation of 35 U.S.C. 112 (pre-AIA ), second paragraph: The specification shall conclude with one or more claims particularly pointing out and distinctly claiming the subject matter which the applicant regards as his invention. Claims 178-196 and 200 are rejected under 35 U.S.C. 112(b) or 35 U.S.C. 112 (pre-AIA ), second paragraph, as being indefinite for failing to particularly point out and distinctly claim the subject matter which the inventor or a joint inventor (or for applications subject to pre-AIA 35 U.S.C. 112, the applicant), regards as the invention. Claim 178 recites the limitations “adding to the assay two or more detectors, wherein a first detector is a double-stranded nucleic acid configured for hybridization with the double-stranded nucleic acid formed in situ, and a second detector is configured for hybridization with the first detector to amplify the signal of the target molecule, wherein at least one of the two or more detectors comprises a double-stranded linear nucleic acid, and wherein at least one of the two or more detectors comprises a double-stranded branched nucleic acid comprising: (i) at least three single-stranded nucleic acids; and (ii) at least three overhangs, wherein one of the at least three overhangs is configured for hybridization with the first detector and/or the second detector.” There are a few issues noted with these limitations: It is unclear from these limitations how, if the double-stranded branched nucleic acid serves as the first detector, it is possible for the double-stranded branched nucleic acid to have three available overhangs as later described in (ii). One overhang would necessarily be occupied by hybridizing to the double-stranded nucleic acid formed in situ, and therefore is prohibited from being one of the three overhangs as claimed. It is also unclear from these limitations how a signal is generated given that there is no aspect of the method claimed that would ultimately generate a signal. While a detection tag is introduced in claim 183, there is no detection tag claimed in claim 178, and therefore it is unclear what signal may be produced by the method detailed in claim 178. Also, given that there is no signal generating structure, it is further unclear how that signal may be amplified. Further, there is no active method step of either generating or detecting any signal in any claim. Finally, it is unclear from these limitations how a signal is amplified when as few as two detectors are required by the claim, and further only two detectors are described. Amplification of a signal would suggest that multiple signals are added to produce a more prominent signal. However, given that as few as two detectors are described in claim 178, and only two specific detectors are described, it is unclear how signal from two detectors would serve to amplify the signal as claimed. This signal amplification is also reasonably affected by the issue noted immediately above regarding signal generation. Overall, claim 178 is found indefinite. Claims 179-196 and 200 are also rejected here for their dependence on claim 178 and not fully clarifying the identified issues. Prior Art The prior art made of record and not relied upon is considered pertinent to applicant's disclosure. Todd (US 20140017669 A1) teaches on a double-stranded branched nucleic acid detector comprising at least three single-stranded nucleic acids and at least three overhangs (Figure 22; Page 26, paragraphs [0602]-[0604]). However, the method in which this double-stranded branched nucleic acid detector is used does not involve using overhangs to hybridize to other nucleic acid detectors. The structure of the double-stranded branched nucleic acid detector is cleaved by restriction enzymes to separate fluorophore/quencher pairs after hybridization of target nucleic acid fragments. Conclusion All claims stand rejected. Any inquiry concerning this communication or earlier communications from the examiner should be directed to Allison E Schloop whose telephone number is (703)756-4597. The examiner can normally be reached Monday-Friday 8:30-5 ET. Examiner interviews are available via telephone, in-person, and video conferencing using a USPTO supplied web-based collaboration tool. To schedule an interview, applicant is encouraged to use the USPTO Automated Interview Request (AIR) at http://www.uspto.gov/interviewpractice. If attempts to reach the examiner by telephone are unsuccessful, the examiner’s supervisor, Anne Gussow can be reached at (571) 272-6047. The fax phone number for the organization where this application or proceeding is assigned is 571-273-8300. Information regarding the status of published or unpublished applications may be obtained from Patent Center. Unpublished application information in Patent Center is available to registered users. To file and manage patent submissions in Patent Center, visit: https://patentcenter.uspto.gov. Visit https://www.uspto.gov/patents/apply/patent-center for more information about Patent Center and https://www.uspto.gov/patents/docx for information about filing in DOCX format. For additional questions, contact the Electronic Business Center (EBC) at 866-217-9197 (toll-free). If you would like assistance from a USPTO Customer Service Representative, call 800-786-9199 (IN USA OR CANADA) or 571-272-1000. /ALLISON E SCHLOOP/Examiner, Art Unit 1683 /Robert T. Crow/Primary Examiner, Art Unit 1683
Read full office action

Prosecution Timeline

Show 16 earlier events
Aug 14, 2025
Response Filed
Oct 27, 2025
Final Rejection mailed — §112
Jan 27, 2026
Response after Non-Final Action
Jan 27, 2026
Response after Non-Final Action
Mar 26, 2026
Response after Non-Final Action
Mar 26, 2026
Request for Continued Examination
Mar 28, 2026
Response after Non-Final Action
Jul 07, 2026
Non-Final Rejection mailed — §112 (current)

Precedent Cases

Applications granted by this same examiner with similar technology

Patent 12655481
DNA SEQUENCING USING CONTROLLED STRAND DISPLACEMENT
4y 2m to grant Granted Jun 16, 2026
Patent 12624392
MOLECULAR ARRAY GENERATION USING PHOTORESIST
4y 4m to grant Granted May 12, 2026
Patent 12571051
METHOD OF ISOLATING CIRCULATING NUCLEOSOMES
4y 0m to grant Granted Mar 10, 2026
Patent 12558433
POLYNUCLEOTIDE-LINKED BIOCONJUGATES AND METHODS OF MAKING AND USING
4y 2m to grant Granted Feb 24, 2026
Patent 12553091
Gene Panels for Molecular Subtype and Survival Risk Assessment of Lung Adenocarcinoma and Diagnostic Products and Applications Thereof
3y 11m to grant Granted Feb 17, 2026
Study what changed to get past this examiner. Based on 5 most recent grants.

Strategy Recommendation AI-generated — please review before filing

Get a prosecution strategy drawn from examiner precedents, rejection analysis, and claim mapping.
Typically takes 5-10 seconds — AI-generated, attorney review required before filing

Prosecution Projections

6-7
Expected OA Rounds
64%
Grant Probability
99%
With Interview (+53.8%)
3y 10m (~0m remaining)
Median Time to Grant
High
PTA Risk
Based on 36 resolved cases by this examiner. Grant probability derived from career allowance rate.

Sign in with your work email

Enter your email to receive a magic link. No password needed.

Personal email addresses (Gmail, Yahoo, etc.) are not accepted.

Free tier: 3 strategy analyses per month