Prosecution Insights
Last updated: July 17, 2026
Application No. 17/931,217

Methods of Amplifying Paired Transcript Sequences from Single Cells

Non-Final OA §101
Filed
Sep 12, 2022
Priority
Mar 14, 2020 — provisional 62/989,590 +1 more
Examiner
WOOLWINE, SAMUEL C
Art Unit
1681
Tech Center
1600 — Biotechnology & Organic Chemistry
Assignee
Bruker Spatial Biology Inc.
OA Round
3 (Non-Final)
61%
Grant Probability
Moderate
3-4
OA Rounds
0m
Est. Remaining
81%
With Interview

Examiner Intelligence

Grants 61% of resolved cases
61%
Career Allowance Rate
522 granted / 856 resolved
+1.0% vs TC avg
Strong +20% interview lift
Without
With
+20.3%
Interview Lift
resolved cases with interview
Typical timeline
3y 7m
Avg Prosecution
40 currently pending
Career history
901
Total Applications
across all art units

Statute-Specific Performance

§101
4.0%
-36.0% vs TC avg
§103
56.0%
+16.0% vs TC avg
§102
7.5%
-32.5% vs TC avg
§112
17.3%
-22.7% vs TC avg
Black line = Tech Center average estimate • Based on career data from 856 resolved cases

Office Action

§101
DETAILED ACTION Notice of Pre-AIA or AIA Status The present application, filed on or after March 16, 2013, is being examined under the first inventor to file provisions of the AIA . Response to Amendment The amendment filed 04/27/2026 overcomes all rejections made in the Office action mailed 04/27/2026. Claims 1-4, 6-14, 16-17, 19-24, 28, 32, 45-50 are in condition for allowance. However, upon further consideration, claim 39 is rejected on new grounds as set forth below. Because this rejection could have been made prior to the amendment, it is not necessitated by the amendment and this action is therefore NON-FINAL. Claim Rejections - 35 USC § 101 35 U.S.C. 101 reads as follows: Whoever invents or discovers any new and useful process, machine, manufacture, or composition of matter, or any new and useful improvement thereof, may obtain a patent therefor, subject to the conditions and requirements of this title. Claim 39 is rejected under 35 U.S.C. 101 because the claimed invention is directed to a natural product without significantly more. The claim(s) recite(s) primers, which broadly encompass fragments of naturally occurring polynucleotides. As discussed at MPEP 2106.04(b)(I), “primers” that include fragments of naturally occurring polynucleotides are not patent-eligible unless they are “markedly different” than their nature-based counterparts; see University of Utah Research Foundation v. Ambry Genetics Corp., 774 F.3d 755, 761, 113 USPQ2d 1241, 1244 (Fed. Cir. 2014). This judicial exception is not integrated into a practical application because there are no additional elements recited in the claim other than the primers. The claim(s) does/do not include additional elements that are sufficient to amount to significantly more than the judicial exception because, as just explained, there are no additional elements recited in the claim other than the primers. The claimed kit comprises a first, second, and third RT primer sets, each of which can consist of one primer. As these primers are not limited in sequence, there are countless fragments of natural polynucleotides that could be used as an “RT primer”. Even if the RT primers were limited to those suitable for reverse transcribing TCR mRNA, there are many possible subsequences of natural TCR-encoding sequences that could function as “RT primers”. Therefore, these claimed primers encompass fragments of naturally-occurring polynucleotides. The kit also comprises a set of TCR alpha chain amplification primers and a set of TCR beta chain amplification primers comprising SEQ ID NO 97 and 98, respectively. Each of these sets can consist of a single primer. SEQ ID NOs 97 and 98 are fragments of the natural TCR alpha and beta encoding genes, respectively, as evidenced by the following sequence alignments: SEQ ID NO 97: PNG media_image1.png 228 1582 media_image1.png Greyscale SEQ ID NO 98: PNG media_image2.png 218 1576 media_image2.png Greyscale Finally, the claimed kit comprises “a first set of TCR amplification primers” (which can consist of a single primer) comprising SEQ ID NO 96. However, in the context of the present invention, the language “TCR amplification primers” does not mean the primer is specific for or derived from the TCR genes. Instead, it is simply a primer designed to be identical to all or a portion of a “template switch oligonucleotide”, or TSO, used in synthesizing first strand cDNA. Any arbitrary sequence can be used as a TSO, and a primer comprised of all or a portion of such TSO would function as the claimed “first set of TCR amplification primers”. Therefore, if SEQ ID NO 96 is found within a naturally occurring polynucleotide, this claim element would also encompass a nature-based product and be patent-ineligible. Indeed, SEQ ID NO 96 is found within a naturally occurring polynucleotide, in at least the genome of Apteryx mantelli: SEQ ID NO 96: PNG media_image3.png 252 1578 media_image3.png Greyscale Consequently, all recited elements of the claimed kit encompass fragments of naturally-occurring polynucleotide and are therefore patent-ineligible subject matter under 35 USC 101. Conclusion Claims 1-4, 6-14, 16-17, 19-24, 28, 32, 45-50 are allowed. Claim 39 is rejected. Any inquiry concerning this communication or earlier communications from the examiner should be directed to SAMUEL C WOOLWINE whose telephone number is (571)272-1144. The examiner can normally be reached 9am-5:30pm. Examiner interviews are available via telephone, in-person, and video conferencing using a USPTO supplied web-based collaboration tool. To schedule an interview, applicant is encouraged to use the USPTO Automated Interview Request (AIR) at http://www.uspto.gov/interviewpractice. If attempts to reach the examiner by telephone are unsuccessful, the examiner’s supervisor, GARY BENZION can be reached at 571-272-0782. The fax phone number for the organization where this application or proceeding is assigned is 571-273-8300. Information regarding the status of published or unpublished applications may be obtained from Patent Center. Unpublished application information in Patent Center is available to registered users. To file and manage patent submissions in Patent Center, visit: https://patentcenter.uspto.gov. Visit https://www.uspto.gov/patents/apply/patent-center for more information about Patent Center and https://www.uspto.gov/patents/docx for information about filing in DOCX format. For additional questions, contact the Electronic Business Center (EBC) at 866-217-9197 (toll-free). If you would like assistance from a USPTO Customer Service Representative, call 800-786-9199 (IN USA OR CANADA) or 571-272-1000. /SAMUEL C WOOLWINE/ Primary Examiner, Art Unit 1681
Read full office action

Prosecution Timeline

Sep 12, 2022
Application Filed
Jul 15, 2025
Non-Final Rejection mailed — §101
Oct 13, 2025
Response Filed
Jan 27, 2026
Non-Final Rejection mailed — §101
Apr 27, 2026
Response Filed
Jun 29, 2026
Non-Final Rejection mailed — §101 (current)

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Study what changed to get past this examiner. Based on 5 most recent grants.

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Prosecution Projections

3-4
Expected OA Rounds
61%
Grant Probability
81%
With Interview (+20.3%)
3y 7m (~0m remaining)
Median Time to Grant
High
PTA Risk
Based on 856 resolved cases by this examiner. Grant probability derived from career allowance rate.

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