Prosecution Insights
Last updated: July 17, 2026
Application No. 17/959,679

HIGH-THROUGHPUT AUTOMATED STRAIN LIBRARY GENERATOR

Non-Final OA §102§112
Filed
Oct 04, 2022
Priority
Apr 08, 2020 — provisional 63/006,999 +1 more
Examiner
HUMPHRIES, NICHOLAS ADAM
Art Unit
1631
Tech Center
1600 — Biotechnology & Organic Chemistry
Assignee
Ginkgo Bioworks Inc.
OA Round
1 (Non-Final)
36%
Grant Probability
At Risk
1-2
OA Rounds
0m
Est. Remaining
99%
With Interview

Examiner Intelligence

Grants only 36% of cases
36%
Career Allowance Rate
11 granted / 31 resolved
-24.5% vs TC avg
Strong +78% interview lift
Without
With
+78.1%
Interview Lift
resolved cases with interview
Typical timeline
3y 8m
Avg Prosecution
34 currently pending
Career history
81
Total Applications
across all art units

Statute-Specific Performance

§101
0.5%
-39.5% vs TC avg
§103
64.3%
+24.3% vs TC avg
§102
11.2%
-28.8% vs TC avg
§112
3.1%
-36.9% vs TC avg
Black line = Tech Center average estimate • Based on career data from 31 resolved cases

Office Action

§102 §112
DETAILED ACTION Notice of Pre-AIA or AIA Status The present application, filed on or after March 16, 2013, is being examined under the first inventor to file provisions of the AIA . Election/Restrictions Applicant’s election without traverse of the species, transfected cells, in the reply filed on 26 January 2026 is acknowledged. The elected species, transfected cells, are directed to eukaryotic cells. The specification does not provide a definition of transfected cells, however, transfected cells are generally considered eukaryotic cells as evidenced by Chong et al. (PeerJ 9:e11165, published 21 April 2021). Chong discloses transfection is a process by which foreign nucleic acids are delivered into a eukaryotic cell to modify the host cell’s genetic makeup (Abstract). The specification at paragraph 25, Applicant suggests a population of transfected cells are mammalian cells. Therefore, the definition of transfected cells has been considered in light of the art and the specification to mean eukaryotic cells. As such, all claims directed to non-eukaryotic cells have been withdrawn. Claim 3 is directed to transformed cells, claim 7 is directed to a disaggregation solution comprising microbial grown medium, and claims 11-20 are directed to a method comprising spore forming cells. Claims 3, 7, and 11-20 are withdrawn from further consideration pursuant to 37 CFR 1.142(b) as being drawn to a nonelected species, there being no allowable generic or linking claim. Election was made without traverse in the reply filed on 26 January 2026. Claim Status Claims 3, 7, and 11-20 have been withdrawn and claims 1-2, 4-6, and 8-10 have been considered on their merits. Claim Rejections - 35 USC § 112 The following is a quotation of 35 U.S.C. 112(b): (b) CONCLUSION.—The specification shall conclude with one or more claims particularly pointing out and distinctly claiming the subject matter which the inventor or a joint inventor regards as the invention. The following is a quotation of 35 U.S.C. 112 (pre-AIA ), second paragraph: The specification shall conclude with one or more claims particularly pointing out and distinctly claiming the subject matter which the applicant regards as his invention. Claim 6 is rejected under 35 U.S.C. 112(b) or 35 U.S.C. 112 (pre-AIA ), second paragraph, as being indefinite for failing to particularly point out and distinctly claim the subject matter which the inventor or a joint inventor (or for applications subject to pre-AIA 35 U.S.C. 112, the applicant), regards as the invention. Claim 6 contains the trademark/trade names Pluronic™ F-68, Accumax™, and Accutase™. Where a trademark or trade name is used in a claim as a limitation to identify or describe a particular material or product, the claim does not comply with the requirements of 35 U.S.C. 112(b) or 35 U.S.C. 112 (pre-AIA ), second paragraph. See Ex parte Simpson, 218 USPQ 1020 (Bd. App. 1982). The claim scope is uncertain since the trademark or trade name cannot be used properly to identify any particular material or product. A trademark or trade name is used to identify a source of goods, and not the goods themselves. Thus, a trademark or trade name does not identify or describe the goods associated with the trademark or trade name. In the present case, the trademark/trade name is used to identify/describe dissociation solutions, and accordingly, the identification/description is indefinite. Claim Rejections - 35 USC § 102 In the event the determination of the status of the application as subject to AIA 35 U.S.C. 102 and 103 (or as subject to pre-AIA 35 U.S.C. 102 and 103) is incorrect, any correction of the statutory basis (i.e., changing from AIA to pre-AIA ) for the rejection will not be considered a new ground of rejection if the prior art relied upon, and the rationale supporting the rejection, would be the same under either status. The following is a quotation of the appropriate paragraphs of 35 U.S.C. 102 that form the basis for the rejections under this section made in this Office action: A person shall be entitled to a patent unless – (a)(1) the claimed invention was patented, described in a printed publication, or in public use, on sale, or otherwise available to the public before the effective filing date of the claimed invention. Claims 1-2, 4-6, and 8-10 are rejected under 35 U.S.C. 102(a)(1) as being anticipated by Paull et al. (Nature Methods, Vol.12 N0.9, September 2015, IDS ref.). Regarding claim 1, Paull teaches cells were resuspended into Matrix tubes and refrozen, said cells were thawed before being placed on a robotic deck (p. e2, Online Methods, Automated fibroblast thawing). The thawed cells in the Matrix tubes read as providing a suspension comprising a population of cells. Paull teaches fibroblast growth medium was added to the tubes, centrifuged, supernatant removed, and the cells resuspended in fresh media before being transferred to 12-well plates (p. e2, Online Methods, Automated fibroblast thawing). The 12-well plates read as reservoir plates. Paull teaches each 12-well plate was fed every 3 days over a ten-day growth period (p. e2, Online Methods, Automated fibroblast thawing). The ten-day growth period reads as incubating the reservoir plate. Paull teaches cells grown in 12-well plates were washed and dissociated (disaggregation) with TrypLE Select CTS (p. e2, Online Methods, Automated cell seeding). Paull teaches the cell suspension was transferred into a 96-well imaging plate, centrifuged for 2 min (mechanical force), then counted (p. e2, Online Methods, Automated cell seeding). Paull teaches the cell counts were auto-exported with the liquid-handling software automatically calculated the exact volume of cell suspension required for transfer into daughter wells of a 24-well plate (collecting resuspended cells) to reach user-selected seeding density (p. e2, Online Methods, Automated cell seeding). The disaggregation, application of mechanical force, and collecting resuspended cells read as automatic steps, as Paull teaches these steps as part of an automated cell seeding method. Regarding claim 2, Paull teaches the automated fibroblast production, wherein the automated reprogramming occurs via automated delivery of modified mRNAs encoding reprogramming transcription factors (p. 886, Automated reprogramming). The reprogrammed fibroblasts read as transfected cells. Regarding claim 4, Paull does not specifically identify the temperature which the cells were centrifuged, however, it is understood that these steps were performed in a laboratory with appropriate temperature controls in place. Therefore, absent evidence to the contrary, the cells are considered to have been centrifuged at room temperature which is approximately 20-25°C. This falls in the range of between 4 and 40°C. Regarding claim 5, Paull teaches the cell suspension was automatically transferred into daughter wells of a 24-well plate (multi-well plate) to reach user-selected seeding density (p. e2, Online Methods, Automated cell seeding). The cells in suspension taught by Paull were grown in 12-well plates, prior to the automatic transfer into the multi-well plate (p. e2, Online Methods, Automated cell seeding). Regarding claim 6, Paull teaches the cells are dissociated with TrypLE select CTS, which is a disaggregation solution comprising a protease. Regarding claim 8, Paull teaches the cells were centrifuged for two minutes (p. e2, Online Methods, Automated cell seeding). Regarding claim 9, Paull teaches fibroblast growth medium was added to the tubes, centrifuged, supernatant removed, and the cells resuspended in fresh media (liquid growth medium) before being transferred to 12-well plates (p. e2, Online Methods, Automated fibroblast thawing). Regarding claim 10, Paull teaches the cell counts were auto-exported with the liquid-handling software automatically calculated the exact volume (predetermined volume of growth medium) of cell suspension required for transfer into daughter wells of a 24-well plate to reach user-selected seeding density (p. e2, Online Methods, Automated cell seeding). Thus, the reference anticipates the subject matter of claims 1-2, 4-6, and 8-10. Conclusion No claims are allowed. Any inquiry concerning this communication or earlier communications from the examiner should be directed to NICHOLAS A. HUMPHRIES whose telephone number is (703)756-5556. The examiner can normally be reached Monday - Friday, 7:30am - 4:30 pm. Examiner interviews are available via telephone, in-person, and video conferencing using a USPTO supplied web-based collaboration tool. To schedule an interview, applicant is encouraged to use the USPTO Automated Interview Request (AIR) at http://www.uspto.gov/interviewpractice. If attempts to reach the examiner by telephone are unsuccessful, the examiner’s supervisor, James Schultz can be reached at 571-272-0763. The fax phone number for the organization where this application or proceeding is assigned is 571-273-8300. Information regarding the status of published or unpublished applications may be obtained from Patent Center. Unpublished application information in Patent Center is available to registered users. To file and manage patent submissions in Patent Center, visit: https://patentcenter.uspto.gov. Visit https://www.uspto.gov/patents/apply/patent-center for more information about Patent Center and https://www.uspto.gov/patents/docx for information about filing in DOCX format. For additional questions, contact the Electronic Business Center (EBC) at 866-217-9197 (toll-free). If you would like assistance from a USPTO Customer Service Representative, call 800-786-9199 (IN USA OR CANADA) or 571-272-1000. /N.A.H./Examiner, Art Unit 1631 /LAURA SCHUBERG/Primary Examiner, Art Unit 1631
Read full office action

Prosecution Timeline

Oct 04, 2022
Application Filed
Jun 01, 2026
Non-Final Rejection mailed — §102, §112 (current)

Precedent Cases

Applications granted by this same examiner with similar technology

Patent 12653909
MODIFIED AAV CAPSIDS AND USES THEREOF
4y 2m to grant Granted Jun 16, 2026
Patent 12605541
STABILIZED ANTI-CANCER COLD ATMOSPHERIC PLASMA (CAP)-STIMULATED MEDIA AND METHODS FOR PREPARING AND USING SAME
4y 4m to grant Granted Apr 21, 2026
Patent 12577536
METHOD FOR ISOLATING URETERIC BUD TIP CELLS
3y 11m to grant Granted Mar 17, 2026
Patent 12533383
Method for Producing Cell Aggregate Including Glial Progenitor Cells
3y 11m to grant Granted Jan 27, 2026
Patent 12492373
PRODUCTION METHOD FOR NERVE TISSUE
3y 11m to grant Granted Dec 09, 2025
Study what changed to get past this examiner. Based on 5 most recent grants.

Strategy Recommendation AI-generated — please review before filing

Get a prosecution strategy drawn from examiner precedents, rejection analysis, and claim mapping.
Typically takes 5-10 seconds — AI-generated, attorney review required before filing

Prosecution Projections

1-2
Expected OA Rounds
36%
Grant Probability
99%
With Interview (+78.1%)
3y 8m (~0m remaining)
Median Time to Grant
Low
PTA Risk
Based on 31 resolved cases by this examiner. Grant probability derived from career allowance rate.

Sign in with your work email

Enter your email to receive a magic link. No password needed.

Personal email addresses (Gmail, Yahoo, etc.) are not accepted.

Free tier: 3 strategy analyses per month