Prosecution Insights
Last updated: July 17, 2026
Application No. 18/160,774

COMPOSITIONS AND METHODS FOR ENZYME CATALYZED TOEHOLD MEDIATED STRAND DISPLACEMENT (TMSD)

Final Rejection §112
Filed
Jan 27, 2023
Priority
Jan 27, 2022 — provisional 63/303,880
Examiner
NOAKES, SUZANNE MARIE
Art Unit
1656
Tech Center
1600 — Biotechnology & Organic Chemistry
Assignee
Rutgers, The State University of New Jersey
OA Round
2 (Final)
73%
Grant Probability
Favorable
3-4
OA Rounds
0m
Est. Remaining
91%
With Interview

Examiner Intelligence

Grants 73% — above average
73%
Career Allowance Rate
779 granted / 1065 resolved
+13.1% vs TC avg
Strong +18% interview lift
Without
With
+18.3%
Interview Lift
resolved cases with interview
Typical timeline
2y 7m
Avg Prosecution
50 currently pending
Career history
1106
Total Applications
across all art units

Statute-Specific Performance

§101
2.1%
-37.9% vs TC avg
§103
38.0%
-2.0% vs TC avg
§102
22.0%
-18.0% vs TC avg
§112
15.0%
-25.0% vs TC avg
Black line = Tech Center average estimate • Based on career data from 1065 resolved cases

Office Action

§112
DETAILED ACTION Status of Application The amendments and response filed 23 February 2026 are acknowledged. Claim 3 is cancelled and claims 17-18 are new. Thus, claims 1-3 and 4-18 are pending. Claims 10-16 remain withdrawn from consideration as being drawn to non-elected subject matter (See Election/Restriction below). Thus, claims 1-9 are subject to examination on the merits. Applicant’s affirm the election of Group I, claims 1-9 as recited in the previous First Action on the Merits office action mailed 21 November 2025. Withdrawal of Previous Objection/Rejection The objection to claims 5-8 for minor typographical informalities is withdrawn in view of the amendments to claim 1 and claims 5-8. The rejection of claims 1-9 under 35 U.S.C. 112(b) is withdrawn in view of the amendment to recite a comparative in claim 1 for the increased solubility. The rejection of claim 4 under 35 U.S.C. 112(b), for two issues is withdrawn because in the first instance, the insertion that the twinkle enzyme is encoded by SEQ ID NO: 20; and second, because it makes clear that the enzyme is SEQ ID NO: 19 or encoded by SEQ ID NO: 20 and that these sequences are not just directed to the sequence of the SUMO tag. The rejection of claims 1-9 under 35 U.S.C. 112(a) is withdrawn in view of the amendments to insert the SUMO tag into claim 1. The rejection of claim(s) 1-3 and 8-9 under 35 U.S.C. 102(a)(1) as being anticipated by Farge et al. (Nucleic Acid Res., 2008 – cited previously) as evidenced by human Twinkle protein UniProt Q96RR.1, encoded by TWNK gene (cited previously) is withdrawn as Farge et al. do not teach a Twinkle enzyme comprising an N-terminal deletion and a SUMO tag fusion, and which has increased solubility. The rejection of claim(s) 1-2 and 8-9 under 35 U.S.C. 102(a)(1) as being anticipated by Fernandez-Milan et al. (Nucleic Acid Res., 2015 – cited on IDS) as evidenced by human Twinkle protein UniProt Q96RR.1, encoded by TWNK gene (cited previously) is withdrawn as Fernandez-Milan et al. do not teach a Twinkle enzyme comprising an N-terminal deletion and a SUMO tag fusion, and which has increased solubility. New Rejection – Necessitated by Amendment(s) Claim Rejections - 35 USC § 112(b) The following is a quotation of 35 U.S.C. 112(b): (b) CONCLUSION.—The specification shall conclude with one or more claims particularly pointing out and distinctly claiming the subject matter which the inventor or a joint inventor regards as the invention. Claim 4 is rejected under 35 U.S.C. 112(b) as being indefinite for failing to particularly point out and distinctly claim the subject matter which the inventor or a joint inventor regards as the invention. Claim 4 recites the limitation (in line three) "wherein the soluble isolated truncated twinkle…." in reference to claim 1. There is insufficient antecedent basis for this limitation in the claim because claim 1 has removed the term “isolated” from the claim. Conclusion Claims 1-2, 5-9, 17-18 are allowed. Claim 4 is rejected. Claims 10-16 are withdrawn. It is noted, should the rejection of claim 4 be remedied and overcome, in order for rejoinder of the withdrawn claims to occur, several deficiencies with said withdrawn claims need fixing. Applicant's amendment necessitated the new ground(s) of rejection presented in this Office action. Accordingly, THIS ACTION IS MADE FINAL. See MPEP § 706.07(a). Applicant is reminded of the extension of time policy as set forth in 37 CFR 1.136(a). A shortened statutory period for reply to this final action is set to expire THREE MONTHS from the mailing date of this action. In the event a first reply is filed within TWO MONTHS of the mailing date of this final action and the advisory action is not mailed until after the end of the THREE-MONTH shortened statutory period, then the shortened statutory period will expire on the date the advisory action is mailed, and any nonprovisional extension fee (37 CFR 1.17(a)) pursuant to 37 CFR 1.136(a) will be calculated from the mailing date of the advisory action. In no event, however, will the statutory period for reply expire later than SIX MONTHS from the mailing date of this final action. Any inquiry concerning this communication or earlier communications from the examiner should be directed to SUZANNE M NOAKES whose telephone number is (571)272-2924. The examiner can normally be reached M-F (7-4). Examiner interviews are available via telephone, in-person, and video conferencing using a USPTO supplied web-based collaboration tool. To schedule an interview, applicant is encouraged to use the USPTO Automated Interview Request (AIR) at http://www.uspto.gov/interviewpractice. If attempts to reach the examiner by telephone are unsuccessful, the examiner’s supervisor, Manjunath Rao can be reached at 571-272-0939. The fax phone number for the organization where this application or proceeding is assigned is 571-273-8300. Information regarding the status of published or unpublished applications may be obtained from Patent Center. Unpublished application information in Patent Center is available to registered users. To file and manage patent submissions in Patent Center, visit: https://patentcenter.uspto.gov. Visit https://www.uspto.gov/patents/apply/patent-center for more information about Patent Center and https://www.uspto.gov/patents/docx for information about filing in DOCX format. For additional questions, contact the Electronic Business Center (EBC) at 866-217-9197 (toll-free). If you would like assistance from a USPTO Customer Service Representative, call 800-786-9199 (IN USA OR CANADA) or 571-272-1000. /SUZANNE M NOAKES/Primary Examiner, Art Unit 1656 13 April 2026
Read full office action

Prosecution Timeline

Jan 27, 2023
Application Filed
Nov 21, 2025
Non-Final Rejection mailed — §112
Feb 23, 2026
Response Filed
Apr 06, 2026
Examiner Interview (Telephonic)
Apr 17, 2026
Final Rejection mailed — §112
Jul 15, 2026
Applicant Interview (Telephonic)

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Study what changed to get past this examiner. Based on 5 most recent grants.

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Prosecution Projections

3-4
Expected OA Rounds
73%
Grant Probability
91%
With Interview (+18.3%)
2y 7m (~0m remaining)
Median Time to Grant
Moderate
PTA Risk
Based on 1065 resolved cases by this examiner. Grant probability derived from career allowance rate.

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