Prosecution Insights
Last updated: May 29, 2026
Application No. 17/974,598

COMPLEMENT FACTOR B (CFB) IRNA COMPOSITIONS AND METHODS OF USE THEREOF

Final Rejection §112
Filed
Oct 27, 2022
Priority
Apr 30, 2020 — provisional 63/017,725 +3 more
Examiner
TRAN, CHRISTINA L
Art Unit
1637
Tech Center
1600 — Biotechnology & Organic Chemistry
Assignee
Alnylam Pharmaceuticals, Inc.
OA Round
2 (Final)
47%
Grant Probability
Moderate
3-4
OA Rounds
3m
Est. Remaining
98%
With Interview

Examiner Intelligence

Grants 47% of resolved cases
47%
Career Allowance Rate
22 granted / 47 resolved
-13.2% vs TC avg
Strong +51% interview lift
Without
With
+51.2%
Interview Lift
resolved cases with interview
Typical timeline
3y 11m
Avg Prosecution
41 currently pending
Career history
104
Total Applications
across all art units

Statute-Specific Performance

§101
2.5%
-37.5% vs TC avg
§103
45.5%
+5.5% vs TC avg
§102
5.8%
-34.2% vs TC avg
§112
21.1%
-18.9% vs TC avg
Black line = Tech Center average estimate • Based on career data from 47 resolved cases

Office Action

§112
Notice of Pre-AIA or AIA Status The present application, filed on or after March 16, 2013, is being examined under the first inventor to file provisions of the AIA . DETAILED ACTION Applicant's amendments and remarks filed on February 19, 2026 are acknowledged. Claims 2-9, 11-14, 16-19, 21-27, 29, 34-43, 46-50, 52-56, 58, and 60-73 have been canceled. Claims 1, 10, 15, 31, 32, 74, 82, and 83 were amended. Claims 1, 10, 15, 20, 28, 30-33, 44, 45, 51, 57, 59, and 74-83 are pending. Election/Restrictions Claims 1, 10, 15, 20, 28, 30-33, 44, 45, and 74-83 are allowable. Claims 51, 57, and 59, previously withdrawn from consideration as a result of a restriction requirement, require all the limitations of an allowable claim. Pursuant to the procedures set forth in MPEP § 821.04(a), the restriction requirement among inventions I through III, as set forth in the Office action mailed on June 20, 2025, is hereby withdrawn and claims 51, 57, and 59 are hereby rejoined and fully examined for patentability under 37 CFR 1.104. In view of the withdrawal of the restriction requirement, applicant(s) are advised that if any claim presented in a divisional application is anticipated by, or includes all the limitations of, a claim that is allowable in the present application, such claim may be subject to provisional statutory and/or nonstatutory double patenting rejections over the claims of the instant application. Once the restriction requirement is withdrawn, the provisions of 35 U.S.C. 121 are no longer applicable. See In re Ziegler, 443 F.2d 1211, 1215, 170 USPQ 129, 131-32 (CCPA 1971). See also MPEP § 804.01. Claims 1, 10, 15, 20, 28, 30-33, 44, 45, 51, 57, 59, and 74-83 are examined on the merits herein. Priority PNG media_image1.png 82 476 media_image1.png Greyscale Withdrawn Objections In view of Applicant’s amendments and response, the objections to the drawings and specification are withdrawn. Withdrawn Rejections In view of Applicant’s amendments and response, the 35 U.S.C 112(b) and 35 U.S.C 103 rejections are withdrawn. Information Disclosure Statement The information disclosure statement (IDS) submitted on February 19, 2026 is in compliance with the provisions of 37 CFR 1.97. Accordingly, the information disclosure statement is being considered by the examiner. Drawings The drawings were received on February 19, 2026. These drawings are found acceptable by the examiner. Specification The disclosure filed on 06/07/2023 is objected to because of the following informalities: Page 9, lines 26 and 32 reads “associate” and should read “associated”. Page 115, lines 27 and 33 reads “associate” and should read “associated”. Page 115, line 32 is missing a period at the end of the paragraph. Page 166, line 27 reads “sligntly” and should read “slightly”. Page 167, line 7 reads “taregting” and should read “targeting”. Appropriate correction is required. Claim Objections Claims 32, 82, and 83 are objected to because of the following informalities: The structure in claims 32, 82, and 83 (reproduced below) appears to be cut off (designated by arrows). PNG media_image2.png 508 826 media_image2.png Greyscale Appropriate correction is required. Response to Arguments Applicant's arguments filed February 19, 2026 have been fully considered but they are not persuasive. Applicant asserts that the structure in claims 32, 82, and 83 have been replaced rendering the objection to these claims moot. Contrary to Applicant’s assertions, the structure in these claims still appear to be cut off as shown in the image above designated by arrows. Claim Rejections - 35 USC § 112 The following is a quotation of the first paragraph of 35 U.S.C. 112(a): (a) IN GENERAL.—The specification shall contain a written description of the invention, and of the manner and process of making and using it, in such full, clear, concise, and exact terms as to enable any person skilled in the art to which it pertains, or with which it is most nearly connected, to make and use the same, and shall set forth the best mode contemplated by the inventor or joint inventor of carrying out the invention. The following is a quotation of the first paragraph of pre-AIA 35 U.S.C. 112: The specification shall contain a written description of the invention, and of the manner and process of making and using it, in such full, clear, concise, and exact terms as to enable any person skilled in the art to which it pertains, or with which it is most nearly connected, to make and use the same, and shall set forth the best mode contemplated by the inventor of carrying out his invention. Claims 57 and 59 are rejected under 35 U.S.C. 112(a) or 35 U.S.C. 112 (pre-AIA ), first paragraph, as failing to comply with the enablement requirement. The claim(s) contains subject matter which was not described in the specification in such a way as to enable one skilled in the art to which it pertains, or with which it is most nearly connected, to make and/or use the invention. There are many factors to be considered when determining whether there is sufficient evidence to support a determination that a disclosure does not satisfy the enablement requirement and whether any necessary experimentation is "undue". These factors include, but are not limited to: (A) The breadth of the claims; (B) The nature of the invention; (C) The state of the prior art; (D) The level of one of ordinary skill; (E) The level of predictability in the art; (F) The amount of direction provided by the inventor; (G) The existence of working examples; and (H) The quantity of experimentation needed to make or use the invention based on the content of the disclosure. All of the Wands factors have been considered with regard to the instant claims, with the most relevant factors discussed below. Breadth of claims: Claim 57 is drawn to a method of treating a subject having a disorder that would benefit from reduction in complement factor B expression, comprising administering to the subject a therapeutically effective amount of the dsRNA agent, or a salt thereof, of claim 1, thereby treating the subject having the disorder that would benefit from reduction in complement factor B expression. Claim 59 further limits the disorder to a complement factor B-associated disorder. The broadest reasonable interpretation of claim 57 is that the method encompasses treating a subject having any disorder that would benefit from reduction in complement factor B expression comprising administering to the subject a therapeutically effective amount of the dsRNA agent, or a salt thereof, of claim 1. The broadest reasonable interpretation of claim 59 is that the disorder is any complement factor B-associated disorder. Nature of the invention: The specification filed on June 7, 2023 envisions that the invention provides a method of treating a subject having a disorder that would benefit from reduction in complement factor B (CFB) expression [page 10, first paragraph]. In one embodiment, the disorder is a complement factor B-(CFB)-associated disorder [page 10, line 13]. The specification further discloses that the term "complement factor B disease" or "CFB-associated disease," is a disease or disorder that is caused by, or associated with, complement activation [page 27, lines 33-34]. The specification also discloses that complement factor B-associated disorders are typically associated with inflammation or immune system activation, e.g., membrane attack complex-mediated lysis, anaphylaxis, or hemolysis. PNG media_image3.png 60 780 media_image3.png Greyscale PNG media_image4.png 674 696 media_image4.png Greyscale [page 8, last paragraph bridging to page 9]. PNG media_image5.png 240 694 media_image5.png Greyscale [page 9, first and second full paragraphs]. Amount of direction provided by the inventor and existence of working examples: Working example 2 discloses in vitro single dose screens of dsRNA agents in Hep3B cells and primary mouse hepatocytes (PMH). The results of the single dose screens in Hep3B cells are shown in Tables 8, 9, and 12. The results of the single dose screens in PMH cells are shown in Tables 10 and 11. Working examples 3 and 4 discloses in vivo screening of dsRNA duplexes in mice wherein mice were administered an AAV8 vector encoding human complement factor B by intravenous tail vein injection. The results demonstrated that human CFB mRNA levels were reduced upon treatment with a single dose of siRNA targeting hCFB at 2 mg/kg. Working example 6 evaluated whether hemolytic activity could be strongly suppressed using a combination of a dsRNA agent targeting complement component C3 and a dsRNA agent targeting complement component C5 or a dsRNA agent targeting complement component factor B as compared to use of a single dsRNA targeting C3, C5, or CFB alone. The results demonstrated that the combination of a dsRNA agent targeting C3 and a dsRNA agent targeting CFB effectively suppressed alternative hemolysis activity to less than about 10% while the combination of a dsRNA agent targeting C3 and a dsRNA agent targeting C5 effectively suppresses classical hemolysis activity. State of the prior art, level of predictability in the art, and level of one of ordinary skill: Morgan et al. (Nature Reviews Drug Discovery 2015) discloses that the complement system is a key innate immune defense against infection and an important driver of inflammation; however, these very properties can also cause harm. Inappropriate or uncontrolled activation of complement can cause local and/or systemic inflammation, tissue damage and disease [abstract]. Further, as the field has grown, it has become increasingly clear that there will be no ‘one size fits all’ solution to complement therapies; agents that are effective in one disease might do nothing in, or even exacerbate, another. Rational design and selection of therapies will require in-depth understanding of the way complement works in each disease [page 859, left column, third full paragraph]. Morgan et al. also discloses that hurdles to the commercialization of complement therapeutics still exist, including cost, routes of administration and infection risk [page 873, right column, second full paragraph]. Schubart et al. (PNAS 2019) discloses that dysregulation of the alternative complement pathway (AP) predisposes individuals to a number of diseases including paroxysmal nocturnal hemoglobinuria, atypical hemolytic uremic syndrome, and C3 glomerulopathy [abstract]. In addition, recent studies have revealed that the AP may also contribute to a number of Ig-mediated kidney pathologies [page 7926, left column, first paragraph]. Quantity of experimentation: In view of the breadth of the claims which embrace treating a subject having any complement factor B-associated disorder that would benefit from reduction in complement factor B expression comprising administering to the subject a therapeutically effective amount of the dsRNA agent, or a salt thereof, of claim 1, the state and level of predictability in the art, the lack of working examples to show treating a subject having any disorder that would benefit from reduction in complement factor B expression wherein the disorder is any complement factor B-associated disorder, and the failure to provide adequate guidance to overcome the state and level of predictability of the art, one of skill would have to perform undue experimentation in order to practice the invention commensurate in scope with the claims. Allowable Subject Matter Claims 1, 10, 15, 20, 28, 30-33, 44, 45, 51, and 74-83 are allowed. The following is a statement of reasons for the indication of allowable subject matter: The closest prior art is Borodovsky et al. (US 2016/0298124, reference of record). Borodovsky et al. teaches iRNA, e.g., double-stranded ribonucleic acid (dsRNA) and compositions targeting the complement factor B (CFB) gene [abstract]. Further, Borodovsky et al. teaches double-stranded ribonucleic acids (dsRNA) comprising a sense strand and an antisense strand for inhibiting expression of complement factor B (CFB) in a cell, wherein the antisense strand comprises at least 15 contiguous nucleotides differing by no more than 3 nucleotides from any one of the nucleotide sequence of SEQ ID NOS: 12-16, 33, and 36 [0014]. Borodovsky et al. teaches SEQ ID NO: 12 (designated as Db) which is an antisense sequence of a CFB nucleotide sequence [0343]. SEQ ID NO: 12 is the reverse complement of NM_001710.5. The closest prior art oligonucleotide is designated as AD-60309.1 [Table 3]. The sense sequence of this duplex targeted positions 2393-2413 and the antisense sequence of this duplex targeted positions 2391-2413 of NM_001710.5. The sense sequence of AD-560018.1 (instant SEQ ID NO: 450) targeted positions 2397-2417 and the antisense sequence of AD-560018.1 (instant SEQ ID NO: 521) targeted positions 2395-2417 of NM_001710.5. Therefore, the positions targeted by the closest prior art oligonucleotide overlap with the positions targeted by the claimed oligonucleotide. Duplex ID Sense ID Sense sequence Antisense ID Antisense seq PNG media_image6.png 36 1186 media_image6.png Greyscale A single dose screen in primary mouse hepatocytes transfected with AD-60309.1 was performed at 10 nM and 0.1 nM. The results indicate that at 10 nM, 100.72% of message remained relative to untreated cells and at 0.1 nM 112.85% of message remained relative to untreated cells [0886] and [Table 10]. In the instant specification, Table 4 (reproduced below) shows unmodified sense and antisense strand sequences of Complement Factor B dsRNA agents. Specifically, Table 4 shows that AD-560016, AD-560017, AD-560019, and AD-560021 all target the same region of the CFB gene as AD-560018. Furthermore, the table demonstrates that the duplexes designated as AD-560016, AD-560017, AD-560018, AD-560019, and AD-560021 all target the same region as Borodovsky et al. AD-60309.1. PNG media_image7.png 280 1026 media_image7.png Greyscale As evidenced by Table 5 of the specification filed on June 7, 2023, AD-560016, AD-560017, AD-560019, and AD-560021 have the same modification pattern as AD-560018 (reproduced below). Duplex Sense sequence SID Antisense sequence SID mRNA target sequence SID PNG media_image8.png 18 1016 media_image8.png Greyscale PNG media_image9.png 20 1006 media_image9.png Greyscale PNG media_image10.png 34 1008 media_image10.png Greyscale PNG media_image11.png 20 1006 media_image11.png Greyscale According to Tables 9 and 10 (reproduced below), the specific structural features and modification pattern of AD-560018 does demonstrate superior ability to inhibit expression of CFB and provides unexpected and improved results compared to other oligonucleotides that target other regions of the CFB gene. Table 9: Complement Factor B In Vitro Single Dose Screens in Hep3B cells PNG media_image12.png 526 924 media_image12.png Greyscale PNG media_image13.png 34 930 media_image13.png Greyscale PNG media_image14.png 38 944 media_image14.png Greyscale Table 10: Complement Factor B In Vitro Single Dose Screens in Primary Mouse Hepatocytes PNG media_image15.png 522 948 media_image15.png Greyscale Comparing instant AD-560018.1 to the closest prior art oligonucleotide (AD-60309.1), it is unexpected that AD-560018.1 only had 13.28% of message remaining compared to AD-60309.1 which had 100.72% of message remaining when the primary mouse hepatocytes were transfected with the oligonucleotide at 10nM dose. Therefore, claims 1, 10, 15, 20, 28, 30-33, 44, 45, 51, and 74-83 are allowable. Conclusion Applicant's amendment necessitated the new ground(s) of rejection presented in this Office action. Accordingly, THIS ACTION IS MADE FINAL. See MPEP § 706.07(a). Applicant is reminded of the extension of time policy as set forth in 37 CFR 1.136(a). A shortened statutory period for reply to this final action is set to expire THREE MONTHS from the mailing date of this action. In the event a first reply is filed within TWO MONTHS of the mailing date of this final action and the advisory action is not mailed until after the end of the THREE-MONTH shortened statutory period, then the shortened statutory period will expire on the date the advisory action is mailed, and any nonprovisional extension fee (37 CFR 1.17(a)) pursuant to 37 CFR 1.136(a) will be calculated from the mailing date of the advisory action. In no event, however, will the statutory period for reply expire later than SIX MONTHS from the mailing date of this final action. Any inquiry concerning this communication or earlier communications from the examiner should be directed to CHRISTINA TRAN whose telephone number is (571)270-0550. The examiner can normally be reached M-F 7:30 - 5:00pm. Examiner interviews are available via telephone, in-person, and video conferencing using a USPTO supplied web-based collaboration tool. To schedule an interview, applicant is encouraged to use the USPTO Automated Interview Request (AIR) at http://www.uspto.gov/interviewpractice. If attempts to reach the examiner by telephone are unsuccessful, the examiner’s supervisor, Jennifer Dunston can be reached at (571) 272-2916. The fax phone number for the organization where this application or proceeding is assigned is 571-273-8300. Information regarding the status of published or unpublished applications may be obtained from Patent Center. Unpublished application information in Patent Center is available to registered users. To file and manage patent submissions in Patent Center, visit: https://patentcenter.uspto.gov. Visit https://www.uspto.gov/patents/apply/patent-center for more information about Patent Center and https://www.uspto.gov/patents/docx for information about filing in DOCX format. For additional questions, contact the Electronic Business Center (EBC) at 866-217-9197 (toll-free). If you would like assistance from a USPTO Customer Service Representative, call 800-786-9199 (IN USA OR CANADA) or 571-272-1000. /C.T./ Examiner, Art Unit 1637 /Jennifer Dunston/Supervisory Patent Examiner, Art Unit 1637
Read full office action

Prosecution Timeline

Oct 27, 2022
Application Filed
Nov 21, 2025
Non-Final Rejection mailed — §112
Feb 19, 2026
Response Filed
Apr 01, 2026
Final Rejection mailed — §112 (current)

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Prosecution Projections

3-4
Expected OA Rounds
47%
Grant Probability
98%
With Interview (+51.2%)
3y 11m (~3m remaining)
Median Time to Grant
Moderate
PTA Risk
Based on 47 resolved cases by this examiner. Grant probability derived from career allowance rate.

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