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Last updated: April 19, 2026

Illumina, Inc.

90 pending office actions

Portfolio Summary

90
Total Pending OAs
24
Final Rejections
66
Non-Final OAs

Pending Office Actions

App #TitleExaminerArt UnitStatusFiled
19362991 SYSTEMS AND METHODS FOR TEMPLATE GENERATION MOTSINGER, SEAN T 2673 Non-Final OA Oct 20, 2025
18885481 METHODS OF PREPARING LOOP FORK LIBRARIES YOUNG, BRIAN ELLIS 1684 Non-Final OA Sep 13, 2024
18725694 IMAGING SYSTEMS AND RELATED SYSTEMS AND METHODS PEREZ-GUZMAN, CARLOS GABRIEL 2877 Non-Final OA Jun 28, 2024
18397836 UNIVERSAL SHORT ADAPTERS WITH VARIABLE LENGTH NON-RANDOM UNIQUE MOLECULAR IDENTIFIERS HORLICK, KENNETH R 1681 Non-Final OA Dec 27, 2023
18392404 BIOINFORMATICS PROCESSING ORCHESTRATION REAGAN, JAMES A 3697 Non-Final OA Dec 21, 2023
18392975 METHODS OF SEQUENCING USING 3' BLOCKED NUCLEOTIDES RILEY, JEZIA 1681 Non-Final OA Dec 21, 2023
18569192 METHODS AND COMPOSITIONS FOR IDENTIFYING METHYLATED CYTOSINES WOOLWINE, SAMUEL C 1681 Non-Final OA Dec 11, 2023
18533863 COMPOSITIONS AND METHODS FOR POLYNUCLEOTIDE SEQUENCING NOGUEROLA, ALEXANDER STEPHAN 1795 Non-Final OA Dec 08, 2023
18568366 DETECTING METHYLCYTOSINE USING A MODIFIED BASE OPPOSITE TO THE METHYLCYTOSINE SALMON, KATHERINE D 1682 Non-Final OA Dec 08, 2023
18534113 FLOW CELLS AND SEQUENCING KITS JONES, CHRISTINE MICHELLE 1682 Non-Final OA Dec 08, 2023
18565027 POLYNUCLEOTIDE SEQUENCING USING IONOPHORES KIM, YOUNG J 1681 Non-Final OA Nov 28, 2023
18505624 SPATIALLY DISTINGUISHED, MULTIPLEX NUCLEIC ACID ANALYSIS OF BIOLOGICAL SPECIMENS SHI, TINGCHEN 1796 Final Rejection Nov 09, 2023
18474589 FLOW CELL BASED MOTION SYSTEM CALIBRATION AND CONTROL METHODS HOBBS, MICHAEL L 1799 Non-Final OA Sep 26, 2023
18467770 NANOPARTICLE WITH POLYNUCLEOTIDE BINDING SITE AND METHOD OF MAKING THEREOF CROW, ROBERT THOMAS 1683 Non-Final OA Sep 15, 2023
18215794 IN-SITU FLUIDIC INSPECTION SHI, TINGCHEN 1796 Non-Final OA Jun 28, 2023
18214907 SUBSTRATES FOR PERFORMING QUANTIFICATION PROCESSES AND RELATED SYSTEMS AND METHODS CHOUDHURY, MUSTAK 2872 Final Rejection Jun 27, 2023
18208834 NANOPORE SENSING SYSTEMS KUMAR, SRILAKSHMI K 1700 Non-Final OA Jun 12, 2023
18325610 COMPOSITIONS AND METHODS FOR NUCLEIC ACID SEQUENCING HARVEY-BUTLER, AVANDA ELEXA 1683 Non-Final OA May 30, 2023
18314437 SPATIALLY DISTINGUISHED, MULTIPLEX NUCLEIC ACID ANALYSIS OF BIOLOGICAL SPECIMENS GREENE, CAROLYN LEE 1681 Final Rejection May 09, 2023
18302193 METHODS AND COMPOSITIONS FOR IDENTIFYING LIGANDS ON ARRAYS USING INDEXES AND BARCODES CROW, ROBERT THOMAS 1683 Non-Final OA Apr 18, 2023
18300343 SYSTEM AND METHOD FOR SECONDARY ANALYSIS OF NUCLEOTIDE SEQUENCING DATA LIU, GUOZHEN 1686 Non-Final OA Apr 13, 2023
18297891 SENSOR WITH LIGHT FILTER AND CROSSTALK REDUCTION MEDIUM FREY, KIMBERLY NEWMAN 2817 Non-Final OA Apr 10, 2023
18129565 MACHINE LEARNING MODELING OF PROBE INTENSITY RODEN, DONALD THOMAS 2128 Non-Final OA Mar 31, 2023
18193522 BARRIERS INCLUDING CROSS-LINKED AMPHIPHILIC MOLECULES, AND METHODS OF MAKING THE SAME BLAND, ALICIA 1759 Non-Final OA Mar 30, 2023
18193492 NANOPORE DEVICES INCLUDING BARRIERS USING DIBLOCK OR TRIBLOCK COPOLYMERS, AND METHODS OF MAKING THE SAME WEYDEMEYER, ETHAN 1783 Non-Final OA Mar 30, 2023
18192291 NUCLEOSIDES AND NUCLEOTIDES WITH 3' VINYL BLOCKING GROUP CREWS, JARET JAMES 1691 Non-Final OA Mar 29, 2023
18191299 METHODS FOR CHEMICAL CLEAVAGE OF SURFACE-BOUND POLYNUCLEOTIDES RILEY, JEZIA 1681 Non-Final OA Mar 28, 2023
18190809 SYSTEMS AND METHODS OF SEQUENCING POLYNUCLEOTIDES GIAMMONA, FRANCESCA FILIPPA 1681 Final Rejection Mar 27, 2023
18184556 PAIRED-END SEQUENCING ZHANG, KAIJIANG 1684 Non-Final OA Mar 15, 2023
18176761 FUNCTIONALIZED NANOSTRUCTURES AND FLOW CELL DEPRESSIONS CROW, ROBERT THOMAS 1683 Non-Final OA Mar 01, 2023
18166023 FLOW CELL SYSTEMS AND METHODS RELATED TO SAME KASS, BENJAMIN JOSEPH 1798 Non-Final OA Feb 08, 2023
18156846 LIGHT ENERGY FLUORESCENCE EXCITATION XU, XIAOYUN 1797 Final Rejection Jan 19, 2023
18013788 A METHOD TO CALIBRATE NUCLEIC ACID LIBRARY SEEDING EFFICIENCY IN FLOWCELLS WILDER, CYNTHIA B 1681 Final Rejection Dec 29, 2022
18089867 METHODS OF NUCLEIC ACID SEQUENCING USING SURFACE-BOUND PRIMERS CROW, ROBERT THOMAS 1683 Non-Final OA Dec 28, 2022
18003281 FANOUT FLOW CELL HERON, VELVET ELIZABETH 1798 Non-Final OA Dec 23, 2022
18069688 INSTRUMENTS, SYSTEMS, AND METHODS FOR MEASURING LIQUID FLOW THROUGH CHANNELS GZYBOWSKI, MICHAEL STANLEY 1798 Non-Final OA Dec 21, 2022
18009545 DRY REAGENT CUP ASSEMBLIES AND METHODS HANDY, DWAYNE K 1798 Non-Final OA Dec 09, 2022
18008953 COMPOSITIONS AND METHODS FOR SEQUENCING USING AT LEAST ELECTRICAL CHARACTERISTICS KENNEDY, SARAH JANE 1682 Final Rejection Dec 07, 2022
17922930 METHODS AND SYSTEMS FOR MONITORING ORGAN HEALTH AND DISEASE VANN-OJUEKAIYE, KENDRA RAYCHELL 1682 Final Rejection Nov 02, 2022
17970504 SEMICONDUCTOR-BASED BIOSENSORS FOR BASE CALLING VANNI, GEORGE STEVEN 1686 Non-Final OA Oct 20, 2022
17968766 COVARIATE CORRECTION INCLUDING DRUG USE FROM TEMPORAL DATA REYES, REGINALD R 3684 Non-Final OA Oct 18, 2022
17937021 Solid Supports and Methods for Depleting and/or Enriching Library Fragments Prepared from Biosamples CHUNDURU, SURYAPRABHA 1681 Non-Final OA Sep 30, 2022
17936722 DYNAMIC GRAPHICAL STATUS SUMMARIES FOR NUCLEOTIDE SEQUENCING MCINNISH, KEVIN K 6221 Non-Final OA Sep 29, 2022
17936200 FLOW CELLS WITH DARK QUENCHER KRCHA, MATTHEW D 1796 Non-Final OA Sep 28, 2022
17907166 METHOD AND COMPOSITIONS FOR PREPARING NUCLEIC ACID LIBRARIES PARISI, JESSICA DANIELLE 1684 Non-Final OA Sep 23, 2022
17933833 NANOPORE SEQUENCING YU, TIAN NMN 1681 Non-Final OA Sep 20, 2022
17947053 INTER-MODEL PREDICTION SCORE RECALIBRATION LI, SUN M 3685 Non-Final OA Sep 16, 2022
17944948 COMPRESSED STATE-BASED BASE CALLING WOITACH, JOSEPH T 1687 Non-Final OA Sep 14, 2022
17930673 CIRCUIT DESIGN TO APPLY DIFFERENT VOLTAGES IN A NANOPORE ARRAY QIAN, SHIZHI 1795 Final Rejection Sep 08, 2022
17898155 FLOW CELLS WITH NANO-PADS AND A HYDROPHOBIC BARRIER LAPAGE, MICHAEL P 2877 Final Rejection Aug 29, 2022
17821410 AUTOMATICALLY IDENTIFYING FAILURE SOURCES IN NUCLEOTIDE SEQUENCING FROM BASE-CALL-ERROR PATTERNS PLAYER, ROBERT AUSTIN 1686 Non-Final OA Aug 22, 2022
17817917 GRAPH REFERENCE GENOME AND BASE-CALLING APPROACH USING IMPUTED HAPLOTYPES LI, SUN M 3685 Non-Final OA Aug 05, 2022
17876528 BASE CALLING USING MULTIPLE BASE CALLER MODELS FONSECA LOPEZ, FRANCINI ALVARENGA 1685 Non-Final OA Jul 28, 2022
17813852 METHODS FOR PREPARING SUBSTRATE SURFACE FOR DNA SEQUENCING RAYMONDA, MATTHEW HAROLD 1684 Non-Final OA Jul 20, 2022
17864930 DECENTRALIZED WORKFLOWS FOR SINGLE CELL ANALYSIS CASH, KAILEY ELIZABETH 1683 Final Rejection Jul 14, 2022
17790077 FLOW CELL ASSEMBLIES AND RELATED REAGENT SELECTOR VALVES KASS, BENJAMIN JOSEPH 1798 Non-Final OA Jun 29, 2022
17839353 SPECIALIST SIGNAL PROFILERS FOR BASE CALLING HAYES, JONATHAN EDWARD 1685 Non-Final OA Jun 13, 2022
17839075 GENOTYPING VARIABLE NUMBER TANDEM REPEATS LUO, JAMMY NMN 1686 Non-Final OA Jun 13, 2022
17839387 QUALITY SCORE CALIBRATION OF BASECALLING SYSTEMS DARRIGRAND, EMILY ANN 1686 Non-Final OA Jun 13, 2022
17837642 DETERMINING PATHOGENIC RFC1 EXPANSIONS FROM SEQUENCING DATA BEVERIDGE, CONNOR HAMMOND 1687 Non-Final OA Jun 10, 2022
17805138 SIGNAL-TO-NOISE-RATIO METRIC FOR DETERMINING NUCLEOTIDE-BASE CALLS AND BASE-CALL QUALITY KALLAL, ROBERT JAMES 1685 Non-Final OA Jun 02, 2022
17830287 SELF-LEARNED BASE CALLER, TRAINED USING OLIGO SEQUENCES EICHNER, ANDRIELE SILVA 1687 Non-Final OA Jun 01, 2022
17830316 SELF-LEARNED BASE CALLER, TRAINED USING ORGANISM SEQUENCES PLAYER, ROBERT AUSTIN 1686 Non-Final OA Jun 01, 2022
17826091 FLOW CELLS AND METHODS TURPIN, ZACHARY MARK 1682 Final Rejection May 26, 2022
17748455 UMI COLLAPSING DHARITHREESAN, NIDHI 1686 Final Rejection May 19, 2022
17747569 TEMPLATE PARTICLES WITH MICROPORES AND NANOPORES WRIGHT, SARAH C 1619 Final Rejection May 18, 2022
17747603 MULTI-OMIC ANALYSIS OF EXTRACELLULAR VESICLES IN MONODISPERSE DROPLETS GRAY, JESSICA 1682 Non-Final OA May 18, 2022
17715001 VARIANT PATHOGENICITY PREDICTION USING NEURAL NETWORK YANG, WENYU 1685 Non-Final OA Apr 06, 2022
17703958 EFFICIENT VOXELIZATION FOR DEEP LEARNING SMITH, EMILIE ALINE 1686 Non-Final OA Mar 24, 2022
17700088 METHODS AND COMPOSITIONS FOR NUCLEIC ACID SEQUENCING KAUP, SAHANA S 1612 Non-Final OA Mar 21, 2022
17687551 TILE LOCATION AND/OR CYCLE BASED WEIGHT SET SELECTION FOR BASE CALLING SCHULTZHAUS, JANNA NICOLE 1685 Non-Final OA Mar 04, 2022
17687586 ARTIFICIAL INTELLIGENCE-BASED BASE CALLER WITH CONTEXTUAL AWARENESS KALLAL, ROBERT JAMES 1685 Non-Final OA Mar 04, 2022
17586760 Method and System for a Reduced Computation Hidden Markov Model in Computational Biology Applications SCHULTZHAUS, JANNA NICOLE 1685 Final Rejection Jan 27, 2022
17563934 MACHINE LEARNING MODEL FOR RECALIBRATING NUCLEOTIDE BASE CALLS CORRESPONDING TO TARGET VARIANTS HAYES, JONATHAN EDWARD 1685 Final Rejection Dec 28, 2021
17618836 METHODS FOR SEQUENCING POLYNUCLEOTIDES WILDER, CYNTHIA B 1681 Final Rejection Dec 13, 2021
17548424 MACHINE LEARNING-BASED GENOTYPING PROCESS OUTCOME PREDICTION USING AGGREGATE METRICS CRUZ, IRIANA 2681 Final Rejection Dec 10, 2021
17518129 METHODS AND SYSTEMS FOR DETECTING PATHOGENIC MICROBES IN A PATIENT OYEYEMI, OLAYINKA A 1681 Non-Final OA Nov 03, 2021
17518135 SYSTEMS AND METHODS FOR MAKING SEQUENCING LIBRARIES YOUNG, BRIAN ELLIS 1684 Non-Final OA Nov 03, 2021
17511353 DETECTING MATERIALS IN A MIXTURE USING OLIGONUCLEOTIDES SISSON, BRADLEY L 1682 Final Rejection Oct 26, 2021
17447554 CUSTOM DATA FILES FOR PERSONALIZED MEDICINE WHALEY, PABLO S 3619 Final Rejection Sep 13, 2021
17472038 COMPOSITIONS AND METHODS FOR DETECTING AN ABASIC SITE POHNERT, STEVEN C 1683 Non-Final OA Sep 10, 2021
17421573 DNA METHYLATION MEASUREMENT FOR MAMMALS BASED ON CONSERVED LOCI LAFAVE, ELIZABETH ROSE 1684 Final Rejection Jul 08, 2021
17332904 Machine Learning-Based Analysis of Process Indicators to Predict Sample Reevaluation Success BAILEY, STEVEN WILLIAM 1687 Non-Final OA May 27, 2021
17314513 GENOME SEQUENCING AND DETECTION TECHNIQUES AUGER, NOAH ANDREW 1687 Non-Final OA May 07, 2021
17280746 IDENTIFICATION AND ANALYSIS OF MICROBIAL SAMPLES BY RAPID INCUBATION AND NUCLEIC ACID ENRICHMENT SWITZER, JULIET CAROLINE 1682 Final Rejection Mar 26, 2021
17197836 Nucleic Acid Sequence Analysis from Single Cells GIAMMONA, FRANCESCA FILIPPA 1681 Non-Final OA Mar 10, 2021
17250814 METHODS AND SYSTEMS FOR MONITORING ORGAN HEALTH AND DISEASE BAILEY, STEVEN WILLIAM 1687 Non-Final OA Mar 05, 2021
17185730 KITS FOR GENOTYPING SALMON, KATHERINE D 1682 Final Rejection Feb 25, 2021
17175546 Artificial Intelligence-Based Base Calling of Index Sequences AUGER, NOAH ANDREW 1687 Final Rejection Feb 12, 2021
17145846 SPATIAL MAPPING OF NUCLEIC ACID SEQUENCE INFORMATION CHUNDURU, SURYAPRABHA 1681 Non-Final OA Jan 11, 2021

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